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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs6088813 1 rs6087705 chr20:34001250 CPNE1 chr20:34213968-34262539:- 0.31 5.93 5.91E-9 Height
THCA cis rs6088813 1 rs6087705 chr20:34001250 GDF5 chr20:33897002-34042568:- -0.17 -3.7 0.000236 Height
THCA cis rs6088813 1 rs6087705 chr20:34001250 UQCC chr20:33890383-33999833:- 0.33 10.46 3.48E-23 Height
THCA cis rs6087771 1 rs6087771 chr20:30306724 COX4I2 chr20:30225691-30232800:+ 0.12 4.05 5.86E-5 Subcortical brain region volumes
THCA cis rs6087771 1 rs6087779 chr20:30370566 COX4I2 chr20:30225691-30232800:+ 0.12 4.03 6.51E-5 Subcortical brain region volumes
THCA cis rs6087771 1 rs6087782 chr20:30391580 COX4I2 chr20:30225691-30232800:+ 0.12 3.94 9.25E-5 Subcortical brain region volumes
THCA cis rs6087990 1 rs6087990 chr20:31349908 MAPRE1 chr20:31407699-31438210:+ 0.17 4.13 4.36E-5 Ulcerative colitis
THCA cis rs6088813 1 rs6088799 chr20:33934301 CEP250 chr20:34042996-34099802:+ -0.15 -3.37 0.000804 Height
THCA cis rs6088813 1 rs6088799 chr20:33934301 CPNE1 chr20:34213968-34262539:- 0.3 5.95 5.17E-9 Height
THCA cis rs6088813 1 rs6088799 chr20:33934301 GDF5 chr20:33897002-34042568:- -0.18 -3.81 0.000154 Height
THCA cis rs6088813 1 rs6088799 chr20:33934301 UQCC chr20:33890383-33999833:- 0.32 10.23 2.48E-22 Height
THCA cis rs6088813 1 rs6088812 chr20:33974163 CEP250 chr20:34042996-34099802:+ -0.15 -3.37 0.000804 Height
THCA cis rs6088813 1 rs6088812 chr20:33974163 CPNE1 chr20:34213968-34262539:- 0.3 5.95 5.17E-9 Height
THCA cis rs6088813 1 rs6088812 chr20:33974163 GDF5 chr20:33897002-34042568:- -0.18 -3.81 0.000154 Height
THCA cis rs6088813 1 rs6088812 chr20:33974163 UQCC chr20:33890383-33999833:- 0.32 10.23 2.48E-22 Height